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Class: CellCard

General cell card class from which more specific cells inherit.

URI: cellcard:CellCard

Inheritance

Slots

Name Range Cardinality Description Info
description_images ImageValue 0..* Images that are included as part of the general description of the cell. .
obo_id string 0..1 The namepace and identifer portion of an OBO ontology class (e.g., CL_0000000). .
ontology_definition string 0..1 An ontology's definition of an entity. .
cell_hierarchy ImageValue 0..1 An image (and associated information) showing where the cell fits within an ontology hierarchy. .
anatomical_location string 0..1 The antatomical location of the cell as defined by the cell onotogy and/or UBERON. .
connections_and_vicinity string 0..1 None .
lineage string 0..1 None .
gene_ontology_associations string 0..* None .
biomarkers string 0..* None .
expressed_ligands string 0..* None .
expressed_receptors string 0..* None .
neighborhood_cell_types string 0..* None .
gene_expression_profiles string 0..* None .
pathways_and_functional_maps string 0..* None .
cell_images ImageValue 0..* None .
cell_line_cells string 0..* None .
clinical_significance string 0..1 None .
references string 0..* None .
id string 0..1 A unique identifier for a thing.
It MUST be either a CURIE shorthand for a URI or a complete URI .
name string 0..1 A human readable label for an entity .
title string 0..1 A name given to the entity that differs from the name/label programatically assigned to it. .
description string 0..1 A human-readable description of a thing. .
alternative_identifiers string 0..* A list of alternative identifiers for the entity. .
alternative_names string 0..* A list of alternative names used to refer to the entity.
The distinction between name and alternative names is application-specific. .
alternative_titles string 0..* A list of alternative titles for the entity. The distinction between title and alternative titles is application-specific. .
alternative_descriptions string 0..* A list of alternative descriptions for the entity.
The distinction between desciption and alternative descriptions is application-specific. .

Usages

used by used in type used
Database cell_card_set range cell card

Identifier and Mapping Information

LinkML Specification

Direct

name: cell card
description: General cell card class from which more specific cells inherit.
from_schema: https://cellcards.org/schema/cellcard
is_a: named thing
attributes:
  description images:
    name: description images
    description: Images that are included as part of the general description of the
      cell.
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    range: image value
  obo id:
    name: obo id
    description: The namepace and identifer portion of an OBO ontology class (e.g.,
      CL_0000000).
    from_schema: https://cellcards.org/schema/cellcard
    range: string
    pattern: ^CL_[0-9]{7}$
  ontology definition:
    name: ontology definition
    description: An ontology's definition of an entity.
    from_schema: https://cellcards.org/schema/cellcard
    range: string
  cell hierarchy:
    name: cell hierarchy
    description: An image (and associated information) showing where the cell fits
      within an ontology hierarchy.
    from_schema: https://cellcards.org/schema/cellcard
    range: image value
  anatomical location:
    name: anatomical location
    description: The antatomical location of the cell as defined by the cell onotogy
      and/or UBERON.
    from_schema: https://cellcards.org/schema/cellcard
    range: string
  connections and vicinity:
    name: connections and vicinity
    from_schema: https://cellcards.org/schema/cellcard
    range: string
  lineage:
    name: lineage
    from_schema: https://cellcards.org/schema/cellcard
    range: string
  gene ontology associations:
    name: gene ontology associations
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    range: string
  biomarkers:
    name: biomarkers
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    range: string
  expressed ligands:
    name: expressed ligands
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    range: string
  expressed receptors:
    name: expressed receptors
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    range: string
  neighborhood cell types:
    name: neighborhood cell types
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    range: string
  gene expression profiles:
    name: gene expression profiles
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    range: string
  pathways and functional maps:
    name: pathways and functional maps
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    range: string
  cell images:
    name: cell images
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    range: image value
  cell line cells:
    name: cell line cells
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    range: string
  clinical significance:
    name: clinical significance
    from_schema: https://cellcards.org/schema/cellcard
    range: string
  references:
    name: references
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    range: string

Induced

name: cell card
description: General cell card class from which more specific cells inherit.
from_schema: https://cellcards.org/schema/cellcard
is_a: named thing
attributes:
  description images:
    name: description images
    description: Images that are included as part of the general description of the
      cell.
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    alias: description_images
    owner: cell card
    range: image value
  obo id:
    name: obo id
    description: The namepace and identifer portion of an OBO ontology class (e.g.,
      CL_0000000).
    from_schema: https://cellcards.org/schema/cellcard
    alias: obo_id
    owner: cell card
    range: string
    pattern: ^CL_[0-9]{7}$
  ontology definition:
    name: ontology definition
    description: An ontology's definition of an entity.
    from_schema: https://cellcards.org/schema/cellcard
    alias: ontology_definition
    owner: cell card
    range: string
  cell hierarchy:
    name: cell hierarchy
    description: An image (and associated information) showing where the cell fits
      within an ontology hierarchy.
    from_schema: https://cellcards.org/schema/cellcard
    alias: cell_hierarchy
    owner: cell card
    range: image value
  anatomical location:
    name: anatomical location
    description: The antatomical location of the cell as defined by the cell onotogy
      and/or UBERON.
    from_schema: https://cellcards.org/schema/cellcard
    alias: anatomical_location
    owner: cell card
    range: string
  connections and vicinity:
    name: connections and vicinity
    from_schema: https://cellcards.org/schema/cellcard
    alias: connections_and_vicinity
    owner: cell card
    range: string
  lineage:
    name: lineage
    from_schema: https://cellcards.org/schema/cellcard
    alias: lineage
    owner: cell card
    range: string
  gene ontology associations:
    name: gene ontology associations
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    alias: gene_ontology_associations
    owner: cell card
    range: string
  biomarkers:
    name: biomarkers
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    alias: biomarkers
    owner: cell card
    range: string
  expressed ligands:
    name: expressed ligands
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    alias: expressed_ligands
    owner: cell card
    range: string
  expressed receptors:
    name: expressed receptors
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    alias: expressed_receptors
    owner: cell card
    range: string
  neighborhood cell types:
    name: neighborhood cell types
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    alias: neighborhood_cell_types
    owner: cell card
    range: string
  gene expression profiles:
    name: gene expression profiles
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    alias: gene_expression_profiles
    owner: cell card
    range: string
  pathways and functional maps:
    name: pathways and functional maps
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    alias: pathways_and_functional_maps
    owner: cell card
    range: string
  cell images:
    name: cell images
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    alias: cell_images
    owner: cell card
    range: image value
  cell line cells:
    name: cell line cells
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    alias: cell_line_cells
    owner: cell card
    range: string
  clinical significance:
    name: clinical significance
    from_schema: https://cellcards.org/schema/cellcard
    alias: clinical_significance
    owner: cell card
    range: string
  references:
    name: references
    from_schema: https://cellcards.org/schema/cellcard
    multivalued: true
    alias: references
    owner: cell card
    range: string
  id:
    name: id
    description: 'A unique identifier for a thing.

      It MUST be either a CURIE shorthand for a URI or a complete URI'
    from_schema: https://cellcards.org/schema/cellcard-core
    multivalued: false
    identifier: true
    alias: id
    owner: cell card
    range: string
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://cellcards.org/schema/cellcard-core
    multivalued: false
    alias: name
    owner: cell card
    range: string
  title:
    name: title
    exact_mappings:
    - dcterms:title
    description: A name given to the entity that differs from the name/label programatically
      assigned to it.
    from_schema: https://cellcards.org/schema/cellcard-core
    multivalued: false
    alias: title
    owner: cell card
    range: string
  description:
    name: description
    description: A human-readable description of a thing.
    from_schema: https://cellcards.org/schema/cellcard-core
    slot_uri: dcterms:description
    multivalued: false
    alias: description
    owner: cell card
    range: string
  alternative identifiers:
    name: alternative identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://cellcards.org/schema/cellcard-core
    multivalued: true
    alias: alternative_identifiers
    owner: cell card
    range: string
  alternative names:
    name: alternative names
    aliases:
    - synomyms
    exact_mappings:
    - dcterms:alternative
    - skos:altLabel
    description: 'A list of alternative names used to refer to the entity.

      The distinction between name and alternative names is application-specific.'
    from_schema: https://cellcards.org/schema/cellcard-core
    multivalued: true
    alias: alternative_names
    owner: cell card
    range: string
  alternative titles:
    name: alternative titles
    exact_mappings:
    - dcterms:alternative
    description: A list of alternative titles for the entity. The distinction between
      title and alternative titles is application-specific.
    from_schema: https://cellcards.org/schema/cellcard-core
    multivalued: true
    alias: alternative_titles
    owner: cell card
    range: string
  alternative descriptions:
    name: alternative descriptions
    description: 'A list of alternative descriptions for the entity.

      The distinction between desciption and alternative descriptions is application-specific.'
    from_schema: https://cellcards.org/schema/cellcard-core
    multivalued: true
    alias: alternative_descriptions
    owner: cell card
    range: string